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ECU = Electronic Control Unit.
Different box on EFI, but same name. Sometimes people call it the CDI or igniter, but the Ninja ignition box is smarter than a dumb CDI. So ECU, CDI, or igniter and people will usually figure out what you mean.
The following is a wiring diagram that should help.
Any chance your creative wiring of the clutch and kick stand have come loose? Also, check the neutral switch to make sure its working. Easy check. If the light is lit on the dash in neutral, its working.
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